Supplementary Material for Mallikarjuna et al. (2017)
Reference:
Mallikarjuna BP, Samineni S, Thudi M, Sajja SB, Khan AW, Patil A, Viswanatha KP, Varshney RK and Gaur PM (2017) Molecular mapping of flowering time major genes and QTLs in chickpea (Cicer arietinum L.).
Genetic map details in CMap
1: Detailed picture of genetic map of the cross ICCV 96029 × CDC Frontier Genetic linkage map of chickpea comprised of 75 loci on eight linkage groups (CaLGs) spanning a total of 248.76 cM, with number of loci per linkage group ranging from 5 (CaLG01 & 08) to 13 (CaLG06).
2: Detailed picture of genetic map of the cross ICC 5810 × CDC Frontier Genetic linkage map of chickpea comprised of 75 loci on eight linkage groups (CaLGs) spanning a total of 331.37 cM, with number of loci per linkage group ranging from 5 (CaLG08) to 13 (CaLG03 & 4).
3: Detailed picture of genetic map of the cross BGD 132 × CDC Frontier Genetic linkage map of chickpea comprised of 68 loci on eight linkage groups (CaLGs) spanning a total of 311.10 cM, with number of loci per linkage group ranging from 4 (CaLG01) to 15 (CaLG03).
4: Detailed picture of genetic map of the cross ICC 16641 × CDC Frontier Genetic linkage map of chickpea comprised of 67 loci on eight linkage groups (CaLGs) spanning a total of 385.13 cM, with number of loci per LG ranging from 5 (CaLG01, 02 & 08) to 14 (CaLG03).
5: Detailed picture of consensus map of chickpea The Consensus map of chickpea was developed from four F2 populations. A total of 109 loci were mapped on 8 linkage groups (CaLGs) spanning a total of 363.85 cM.
Supplementary Tables submitted with MS
Supplementary Table 1: Mean and range of variation of flowering time and maturity in parental lines
Supplementary Table 2: Mean and range of variation of flowering time and maturity in F1s and F2 populations
Supplementary Table 3: Segregation of flowering time in F3 progenies of four chickpea crosses
Supplementary Table 4: Polymorphism status of SSR markers between parental lines of four intraspecific mapping populations
Supplementary Table 5: Primer sequences of the markers flanking the flowering time QTL regions in four chickpea crosses
Supplementary Table 6: Coordinates for the flowering time QTLs identified in four chickpea crosses
Supplementary Figures submitted with MS
Supplementary Figure 1: Genetic linkage map of the cross ICCV 96029 × CDC Frontier with 75 loci spanning 248.76 cM The genetic distance in cM is represented on left hand side and the markers names are on the right hand side of the linkage group. The QTLs identified for flowering time in this cross are shown here.
Supplementary Figure 2: Genetic linkage map of the cross ICC 5810 × CDC Frontier with 75 loci spanning 331.37 cM The genetic distance in cM is represented on left hand side and the markers names are on the right hand side of the linkage group. The QTLs identified for flowering time in this cross are shown here.
Supplementary Figure 3: Genetic linkage map of the cross BGD 132 × CDC Frontier with 68 loci spanning 311.10 cM The genetic distance in cM is represented on left hand side and the markers names are on the right hand side of the linkage group. The QTLs identified for flowering time in this cross are shown here.
Supplementary Figure 4: Genetic linkage map of the cross ICC 16641 × CDC Frontier with 67 loci spanning 385.13 cM The genetic distance in cM is represented on left hand side and the markers names are on the right hand side of the linkage group. The QTLs identified for flowering time in this cross are shown here.
Supplementary Figure 5: QTLs identified for flowering time in the cross ICCV 96029 × CDC Frontier A major QTL on CaLG04 and a minor QTL on CaLG03 were identified for flowering time in this cross.
Supplementary Figure 6: QTLs identified for flowering time in the cross ICC 5810 × CDC Frontier A major QTL each on CaLG01, CaLG03, CaLG04 and CaLG08 were identified for flowering time in this cross.
Supplementary Figure 7: QTLs identified for flowering time in the cross BGD 132 × CDC Frontier A major QTL on CaLG08 and two minor QTLs on CaLG03 were identified for flowering time in this cross.